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VMD is a molecular visualization program for displaying, animating, and analyzing large biomolecular systems using 3-D graphics and built-in scripting. VMD supports computers running MacOS X, Unix, or Windows, is distributed free of charge, and includes source code.
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Breaking News

NAMD and VMD are part of the team winning the 2020 ACM Gordon Bell Special Prize for high performance computing-based COVID-19 research, for the paper AI-Driven Multiscale Simulations Illuminate Mechanisms of SARS-CoV-2 Spike Dynamics, presented at Supercomputing 2020, Nov 18, 2020.

Spotlight

Sunlight powers life on Earth. This basic fact has been known since ancient times and retold many times in many cultures. Today, scientists understand the means through which light powers life at atomistic detail, as a chain of processes climbing scales from electronic interactions to cooperation between proteins to cell-scale integration of energy conversion. These processes have been illustrated in a recent videothat was awarded theBEST SCIENTIFIC VISUALIZATION OF 2019at the SC19 conference, Scientific Visualization & Data Analytics Showcase.The video is a joint production with the team of Donna Coxat NCSAand is based on a decade long collaborative effort with the experimental group ofNeil Hunterand a lifetime research interest for Klaus Schulten.The underlying scientific investigation illustrated in the video was presented in18 manuscripts over the past decade, fromatomic scale structural modelingtoorganelle-scaleandcell-scaleintegration of function.These modeling efforts also led toa molecular dynamics simulation of the chromatophoreusing NAMD,recently published in Cell.The video segment,produced with VMD,that won as the Best Scientific Visualization is an excerpt from the fulldome movie 'Birth of Planet Earth' released to planetariums worldwide by Spitz Creative Media.The oldest story of humanity — light powering life — coming soon to a theater near you.

Other Spotlights

image size:
made with VMD

Overview

Molecular representations
VMD plugin library
Molecular file formats
GPU-accelerated computing
Interactive molecular dynamics
Programs that use VMD
VMD research publications
How to cite VMD
VMD citation list (37,000 as of Mar'21)

Download

Download (all versions)
VMD 1.9.3 (MacOS X, Unix, Windows)
VMD 1.9.2 (MacOS X, Unix, Windows)
VMD 1.9.1 (MacOS X, Unix, Windows)
VMD script library
License, Copyright and Disclaimer

Documentation and Support

User and installation guides
VMD-L mailing list
Publication image tutorial (YouTube)

Quick help
FAQ
Bug List

News and Announcements

AI-driven multiscale simulations illuminate mechanisms of SARS-CoV-2 spike dynamics, IJHPCA, 2021
Multiscale modeling and cinematic visualization of photosynthetic energy conversion processes from electronic to cell scales, J. Par. Comp. 2021
NAMD and VMD part of the team winning the ACM COVID-19 Gordon Bell Prize for 2020
The Coronavirus Unveiled, VMD visualizations of SARS-CoV-2, NYT, 2020
VMD + NVIDIA Ommniverse Folding @ Home Coronavirus Movie, NVIDIA, 2020
Scalable Analysis of Authentic Viral Envelopes on FRONTERA, CiSE, 2020
Scalable molecular dynamics on CPU and GPU architectures with NAMD, JCP, 2020
VMD test builds for MacOS X 10.15 'Catalina' (April 24, 2020)
Atoms to Phenotypes: Molecular Design Principles of Cellular Energy Metabolism, Cell, 2019
An Accessible Visual Narrative for the Primary Energy Source of Life from the Fulldome Show Birth of Planet Earth: Movie Paper
High-Performance Analysis of Biomolecular Containers to Measure Small-Molecule Transport, Transbilayer Lipid Diffusion, and Protein Cavities, JCIM, 2019
Birth of Planet Earth excerpt created using VMD selected for Siggraph Electronic Theater, Siggraph 2019
19,200 human protein structures visualized with VMD, Kresten Lindorff-Larsen
NanoShaper-VMD interface: computing and visualizing surfaces, pockets and channels in molecular systems, Bioinformatics, 2019
Past announcements

Gallery

An Accessible Visual Narrative for the Primary Energy Source of Life from the Fulldome Show Birth of Planet Earth, 1st Place Winner, SC'19 Viz. Showcase
Chromatophore VR demo (VMD + Unreal Game Engine) shown in NVIDIA booth at SC'16
Example VMD VR/3-D YouTube videos
Chemical Visualization of Human Pathogens: the Retroviral Capsids, Finalist, SC'15 Viz. Showcase
Visualization of Energy Conversion Processes in a Light Harvesting Organelle at Atomic Detail, 1st Place Winner, SC'14 Viz. Showcase
VMD movie gallery on YouTube
Gallery of Posters, Images, and Movies made with VMD
VMD running in the NanoDome at Temple University

Development

VMD User Survey Results
VMD development status and pre-release test downloads
CVS source code access
VMD Programmer's documentation

Breaking News

Spotlight

Modern molecular simulation, visualization, and modeling techniques often require high-performance computing hardwareto obtain the best efficiency. However, access to such hardware can be a barrier for some researchers. As an alternative, cloud computing provides a cost-effective and practical solution for many molecular modeling tasks and for small and moderate size molecular dynamics simulations. The cloud computing model provides researchers with access to powerful computational equipment that would otherwise be too costly to procure, maintain,and administer on their own. Additionally, cloud platforms can easily bundle different software packages used in a modeling workflow to guaruntee their availablity and interoperability on a standardized system.We have adapted our molecular modeling applications NAMD, VMD, and associated tools to operate within the Amazon Web Services (AWS) Elastic Compute Cloud (EC2) platform, enabling popular research workflows to be run remotely by scientists all over the globe, with no need for investment in local computing resources and a reduced requirement for expertise in high performance computing technologies.Recent advancements in GPU virtualization technology now make it possible to use cloud computing for large-scale scientific computing, data analysis, and visualization tasks. The latest release of ourcloud software can be run on EC2's latest graphics hardware, backed by DCV, to provide a smooth and seamlessgraphical working environment. Instance types specially designed for parallel CPU or GPU workloadsprovide users with access to the hardware they need to run even the most demanding features of NAMD and VMD,all from their much less powerful personal computers and even laptops. These instances can be paid for on an on-demand, as-needed basis, and someworkflows, such as Molecular Dynamics Flexible Fitting, can be run for less than the cost of a cup of coffee. Our cloud virtual machine image is availble in the Amazon Marketplace, which provides users with a very simple one-click launch using pre-configured choicesof instance types that have been tested with our software.To learn more,see our cloud research page.

Other Spotlights

Overview

Download

Download (all versions)
VMD 1.9.3 (MacOS X, Unix, Windows)
VMD 1.9.2 (MacOS X, Unix, Windows)
VMD 1.9.1 (MacOS X, Unix, Windows)
VMD script library
License, Copyright and Disclaimer

Documentation and Support

User and installation guides
VMD-L mailing list
Publication image tutorial (YouTube)